How neuronal recognition of songbird calls unfolds over time

Scientists develop a new mathematical strategy for studying sensory systems

A novel computational approach sheds new light on the response of neurons in the brain of a songbird when it hears and interprets the meaning of another bird's call. Julie Elie and Frédéric Theunissen of University of California, Berkeley, present the new method and findings in PLOS Computational Biology.

Songbirds use distinct vocal calls to convey different types of information, such as communicating hunger or warning about a nearby predator. Using a large database of zebra finch sounds, Elie and Theunissen previously showed that when one bird hears another's calls, neurons in the auditory region of its brain respond differently to different calls, depending on the different meanings of those calls. {module In-article}

Now, the researchers have investigated how that process of neuronal recognition of different call meanings unfolds over time. Using a mathematical framework known as information theory, they developed a novel method for studying the response of sensory systems to stimuli that must be classified into different categories. They applied it to analyze recordings taken of neuronal activity in finches while they listened to others' calls.

The analysis showed that, for a given recording of a single neuron's activity in response to a call, the initial response contains some information about the call's meaning, but additional information continues to accumulate for up to 600 milliseconds. The onset phase and the sustained response phase capture a similar amount of information about the meaning of the call. The researchers also identified individual neurons that may play a bigger role than others in categorizing the meaning of a given call.

"We found a new method to calculate how information about a behaviorally meaningful category of sounds unfolds in time while an individual is processing communication signals, performing the necessary transformations from sound to meaning," Elie says.

She and Theunissen plan to continue using experimental and computational methods to explore how songbirds' brains process the meanings of different calls. Meanwhile, the novel information theory approach they developed could be applied to other sensory and motor systems in other species to better understand how information processing unfolds overtime at the neuronal level.

Artificial intelligence predicts radiation tx side effects for pts with head & neck cancers

The machine-learning model identified patients most likely to experience significant weight loss or need for a feeding tube

For the first time, a sophisticated supercomputer model has been shown to accurately predict two of the most challenging side effects associated with radiation therapy for head and neck cancer. This precision oncology approach has the potential to better identify patients who might benefit from early interventions that may help to prevent significant weight loss after treatment or reduce the need for feeding tube placement. Findings were presented at the 61st Annual Meeting of the American Society for Radiation Oncology (ASTRO).

"In the past, it has been hard to predict which patients might experience these side effects," said Jay Reddy, MD, Ph.D., an assistant professor of radiation oncology at The University of Texas MD Anderson Cancer Center and lead author on the study. "Now we have a reliable machine learning model, using a high volume of internal institutional data, that allows us to do so." {module In-article}

Machine learning is a branch of artificial intelligence that uses statistical models to analyze large quantities of data, uncovering patterns that can predict outcomes with a high degree of accuracy. Used by the tech industry to allow speech and facial recognition, "spam" filtering and targeted advertising, machine learning has been an emerging topic of interest for medical researchers seeking to translate large amounts of data into knowledge that can support clinical decision making.

Dr. Reddy and his team developed models to analyze large sets of data merged from three sources: electronic health records (Epic), an internal web-based charting tool (Brocade) and the record/verify system (Mosaiq). The data included more than 700 clinical and treatment variables for patients with head and neck cancer (75% male/25% female, with a median age of 62 years) who received more than 2,000 courses of radiation therapy (median dose 60 Gy) across five practice sites at MD Anderson from 2016 to 2018.

Researchers used the models to predict three endpoints: significant weight loss, feeding tube placement, and unplanned hospitalizations. Results from the best-performing model were then validated against 225 subsequent consecutive radiation therapy treatments. Models with a performance rate that met a pre-specified threshold of the area under the curve (AUC) of 0.70 or higher were considered clinically valid. (An AUC score of 1.0 would mean the model's predictions were 100% accurate, while a score of 0.0 would mean the predictions were never accurate.)

Approximately 53,000 people are diagnosed with head and neck (oral cavity or oropharyngeal) cancers each year in the United States. These cancers are more than twice as common in men as in women and typically diagnosed later in life (with an average age of diagnosis of 62 years). Head and neck cancers, when diagnosed early, are typically treated with radiation therapy or surgery. Later-stage cancers are treated with a combination of radiation therapy and chemotherapy. A patient may also be treated first with surgery, followed by radiation therapy alone or by a combination of radiation and chemotherapy.

Radiation therapy is effective at treating head and neck cancer by slowing or stopping the growth of new cancer cells. However, it may also damage oral tissue and upset the balance of bacteria in the mouth, causing adverse side effects such as a sore throat, mouth sores, loss of taste and dry mouth. When sore throats are severe, they can make it difficult for the patient to eat and may lead to weight loss or require the temporary insertion of a feeding tube. Nearly all patients with head and neck cancer experience some negative effects of treatment.

"Being able to identify which patients are at greatest risk would allow radiation oncologists to take steps to prevent or mitigate these possible side effects," said Dr. Reddy. "If the patient has an intermediate risk, and they might get through treatment without needing a feeding tube, we could take precautions such as setting them up with a nutritionist and providing them with nutritional supplements. If we know their risk for feeding tube placement is extremely high - a better than 50% chance they would need one - we could place it ahead of time so they wouldn't have to be admitted to the hospital after treatment. We'd know to keep a closer eye on that patient."

The models predicted the likelihood of significant weight loss (AUC = 0.751) and need for feeding tube placement (AUC = 0.755) with a high degree of accuracy.

"The models used in this study were consistently good at predicting those two outcomes," said Dr. Reddy. "You could rerun those models with a new patient or series of patients and get a number saying this adverse effect is likely to happen or not to happen."

For example, said Dr. Reddy, using their model, clinicians could potentially plugin information related to a specific patient - such as age, gender, type of cancer and other distinct variables - and the model might tell them, "Eighty percent of people like you with this clinical profile get through treatment without a feeding tube. It may not be perfect, but it's better than having no understanding at all."

The model fell short of predicting unplanned hospitalizations with sufficient clinical validity (AUC = 0.64). Redoing the analyses with more "training" data for unplanned hospitalizations could improve accuracy in predicting this side effect as well, said Dr. Reddy. "As we treat more and more patients, the sample size gets bigger, so every data point should get better. It's possible we just didn't have enough information accumulated for this aspect of the model."

While the machine learning approach can't isolate the single-most predictive factor or combination of factors that lead to negative side effects, it can provide patients and their clinicians with a better understanding of what to expect during the course of treatment said Dr. Reddy. In addition to predicting the likelihood of side effects, machine learning models could potentially predict which treatment plans would be most effective for different types of patients and allow for more personalized approaches to radiation oncology, he explained.

"Machine learning can make doctors more efficient and treatment safer by reducing the risk of error," said Dr. Reddy. "It has the potential for influencing all aspects of radiation oncology today - anything where a supercomputer can look at data and recognize a pattern."

Laser light compels iron compound to conduct power without resistance

For the first time, Japanese researchers successfully used laser pulses to excite an iron-based compound into a superconducting state. This means it conducted electricity without resistance. The iron compound is a known superconductor at ultralow temperatures, but this method enables superconduction at higher temperatures. It is hoped this kind of research could greatly improve power efficiency in electrical equipment, supercomputers, and electronic devices. CAPTION Visualizations of electron energies as the experiment ran.  CREDIT © 2019 Suzuki et al.{module In-article}

"Put simply, we demonstrated that under the right conditions, light can induce a state of superconductivity in an iron compound. So it has no resistance to an electric current," explained Project Researcher Takeshi Suzuki from the Institute for Solid State Physics at the University of Tokyo. "In the past, it may even have been called alchemy, but in reality, we understand the physical processes that instantly changed a normal metal into a superconductor. These are exciting times for physics."

Superconduction is a hot topic in solid-state physics, or rather a very, very cold one. As Suzuki explained, superconduction is when a material, frequently an electrical conductor, carries an electric current but does not add to the resistance of the circuit. If this can be realized, it would mean devices and infrastructure based on such principles could be extremely power efficient. In other words, it could one day save you money on your electricity bill -- imagine that.

However, at present, there is a catch as to why you don't already see superconductor-based televisions and vacuum cleaners in the stores. Materials such as iron selenide (FeSe) the researchers investigated only superconduct when they are far below the freezing point of water. In fact, at ambient-pressure FeSe usually superconducts at around 10 degrees above absolute zero, or around minus 263 degrees Celsius, scarcely warmer than the cold, dark depths of space. 212331 web 9b8b5CAPTION The equipment used to run the experiment.  CREDIT © 2019 Suzuki et al.{module In-article}

There is a way to coax FeSe into superconduction at slightly less forbidding temperatures of up to around minus 223 degrees Celsius, but this requires enormous pressures to be applied to the sample, around six gigapascals or 59,000 times standard atmosphere at sea level. That would prove impractical for the implementation of superconduction into useful devices. This then presents a challenge to physicists, albeit one that serves to motivate them as they strive to one day be the first to present a room-temperature superconductor to the world.

"Every material in our daily lives has its character. Foam is soft, rubber is flexible, glass is transparent and a superconductor has a unique trait that current can flow smoothly with no resistance. This is a character we would all like to meet," said graduate student Mari Watanabe, also from the Institute for Solid State Physics. "With a high-energy, ultrafast laser, we successfully observed an emergent photo-excited phenomenon - superconduction - at the warmer temperature of minus 258 degrees Celsius, which would ordinarily require high pressures or other impractical compromises."

This research is the latest in a long line of steps from the discovery of superconduction to the long-awaited day when a room-temperature superconductor may become possible. And as with many emerging fields of study within physics, there may be applications that have not yet been envisaged. One possible use of this idea of photo-excitation is to achieve high-speed switching components for computation which would also produce little heat, thus maximize efficiency. CAPTION Visualisations of photoemission spectra as the experiment ran.  CREDIT © 2019 Suzuki et al.{module In-article}

"Next, we will search for more favorable conditions for light-induced superconductivity by using a different kind of light, and eventually achieve room-temperature superconductivity," concluded Suzuki. "Superconductivity can dramatically reduce waste heat and energy if it can be used in everyday life at room temperature. We are keen to study superconductivity to solve the energy problem, which is one of the most serious problems in the world right now."