University of Glasgow adds 3D magnetic interactions in spintronics that leads to new forms of supercomputing

A new form of magnetic interaction which pushes a formerly two-dimensional phenomenon into the third dimension could open up a host of exciting new possibilities for data storage and advanced supercomputing, scientists say.
 
In a new paper published today in the journal Nature Materials, a team led by physicists from the University of Glasgow describe how they have been found a new way to successfully pass information from a series of tiny magnets arrayed on an ultrathin film across to magnets on a second film below.
 
Their breakthrough adds both a literal and metaphorical extra dimension to ‘spintronics’, the field of science dedicated to data storage, retrieval, and processing, which has already had a major impact on the tech industry.
 
Anyone who’s ever played with a pair of magnets understands that opposites attract – the south pole of one magnet attracts the north pole of the other. While that’s true at the scale most people are familiar with, the way magnets interact with each other undergoes some significant changes as magnets shrink. {module In-article}
 
At the nanoscale – where magnetic materials can be just a few billionths of a meter in size - magnets interact with each other in strange new ways, including the possibility of attracting and repelling each other at 90-degree angles instead of straight-on.
 
Scientists have already learned how to exploit those unusual properties to encode and process information in thin films covered in a single layer of nanoscale magnets.
 
The benefits of these ‘spintronic’ systems – low power consumption, high storage capacity, and greater robustness - have made invaluable additions to technology such as magnetic hard disk drives, and won the discoverers of spintronics a Nobel prize in 2007.
 
However, the functionality of magnetic systems used today in computers remains confined to one plane, limiting their capacity. Now, the University of Glasgow-led team – along with partners from the Universities of Cambridge and Hamburg, the Technical University of Eindhoven and the Aalto University School of Science – have developed a new way to communicate information from one layer to another, adding the new potential for storage and computation.
 
Dr Amalio Fernandez-Pacheco, an EPSRC Early Career Fellow in the University’s School of Physics and Astronomy, is the lead author on the paper. He said: “The discovery of this new type of interaction between neighbor layers gives us a rich and exciting way to explore and exploit unprecedented 3D magnetic states in multi-layered nanoscale magnets.
 
“It’s a bit like being given an extra note in a musical scale to play with - it opens up a whole new world of possibilities, not just for conventional information processing and storage, but potentially for new forms of computing we haven’t even thought of yet.”
 
The inter-layer transmission of information the team has created relies on what is known to physicists as chiral spin interactions, a type of magnetic force that favors a particular sense of rotation in neighbor nanoscale magnets. Thanks to recent advances in spintronics, it is now possible to stabilize these interactions within a magnetic layer. This has for instance been exploited to create skyrmions, a type of nanoscale magnetic object with superior properties for computing applications.
 
The team’s research has now extended these types of interactions to neighboring layers for the first time. They fabricated a multi-layered system formed by ultra-thin magnetic films separated by non-magnetic metallic spacers. The structure of the system and precise tuning of the properties of each layer and its interfaces creates unusual canted magnetic configurations, where the magnetic field of the two layers forms angles between zero and 90 degrees.
 {module In-article}
Unlike in standard multi-layered magnets, it becomes easier for these magnetic fields to form clockwise configurations than anticlockwise ones, a fingerprint that an interlayer chiral spin interaction exists in between the two magnetic layers. This breaking of rotational symmetry was observed at room temperature and under standard environmental conditions. As a result, this new type of interlayer magnetic interaction opens exciting perspectives to realize topologically complex magnetic 3D configurations in spintronic technologies.
 
The team’s paper, titled ‘Symmetry-Breaking Interlayer Dzyaloshinskii-Moriya Interactions in Synthetic Antiferromagnets’, is published in Nature Materials. The research was funded by the Engineering and Physical Sciences Research Council.

Montana State computer scientists help expand horizon of genetics research

A tweaked gene or two among the millions or even billions of proteins that make up an organism's DNA are often all that distinguish the drought-tolerant plant or the person pre-disposed to cancer.

That's why a better understanding of genetic variation within a species could, among other things, help improve the selection of crops for local conditions and detection of disease, according to Joann Mudge, a senior research scientist at the nonprofit National Center for Genome Resources.

A generation ago, recording an organism's DNA from beginning to end was so laborious and expensive that scientists celebrated when they completed the task for a single bacterium. But as genome sequencing becomes faster and cheaper, scientists increasingly have access to insights about which genes do what, Mudge said.

"We're sequencing multiple individuals of some species," including plants and other complex organisms, Mudge said. That allows scientists to begin to sort out which segments of DNA from a species' core genome and which correspond to traits shared by only some individuals, she said. CAPTION Montana State computer science professor Brendan Mumey, right, and assistant professor Indika Kahanda, guide  graduate students Lucia Williams and Buwani Manuweera through coding as part of the pangenomics project on May 16, 2019.  CREDIT MSU Photo by Adrian Sanchez-Gonzalez{module In-article}

But the growing field of pangenomics, as it is called, presents a major analytical challenge. That's why NCGR recently partnered with Montana State University computer scientists to develop software that can compare multiple genomes and make sense of the results. The project is backed by a three-year, $662,000 grant from the National Science Foundation.

"We've been very happy with the way it's working," said Brendan Mumey, a professor in the Gianforte School of Computing in MSU's Norm Asbjornson College of Engineering. He and Mudge are co-leading the project.

According to Mumey, previously available software struggled with analyzing pangenomes for relatively primitive organisms such as the common yeast Saccharomyces cerevisiae, whose genome contains only 12 million of the DNA units known as base pairs. (By comparison, the human genome contains 3 billion base pairs.) Among the known strains of the yeast, minor genetic variations account for physical adaptations such as the ability of brewer's yeast to survive alcohol during the making of beer and wine.

"It's a classic 'big data' problem," Mumey said, referring to the field of supercomputing that deals with exceptionally large and complex data sets.

MSU assistant professor of computer science Indika Kahanda, a member of the research team, specializes in developing the "machine learning" models that help the new software adjust its gene-sorting analysis according to input from scientists. That approach has helped the team, which includes NCGR research scientist Thiru Ramaraj, identify genes of interest in a yeast pangenome that includes roughly 100 strains. Ramaraj earned his doctorate in computer science in 2010 at MSU, where Mumey was his adviser.

Mumey said the researchers' next step is to continue to refine the software so it can handle larger and more complex genomes, such as those of plants. The computational techniques being used "are still in their infancy," he said.

Eventually, pangenomics could help medical professionals diagnose a variety of diseases that have a genetic component, Mudge said. Most inherited breast cancer can be traced to mutations in just two genes, but other genetic diseases are thought to stem from more complex changes across larger areas of DNA.

The improved pangenomics tool is already helping scientists break out of a mold of comparing genomes to a single, arbitrary reference, Mudge said. Instead, researchers can represent a species' entire genome with all its nuance and variety.

"It's a hard problem to solve," Mudge said. "This has been a great collaboration."

University of Tokyo researcher tracks extinct species on ancient Earth via biogeography

One researcher at the University of Tokyo is in hot pursuit of dinosaurs, tracking extinct species around ancient Earth. Identifying the movements of extinct species from millions of years ago can provide insights into ancient migration routes, interaction between species, and the movement of continents.

“If we find fossils on different continents from closely related species, then we can guess that at some point there must have been a connection between those continents,” said Tai Kubo, Ph.D., a postdoctoral researcher affiliated with the University Museum at the University of Tokyo.

A map of life  biogeography
Previous studies in biogeography — the geographic distribution of plants and animals — had not considered the evolutionary relationships between ancient species. The new method that Kubo designed, called biogeographical network analysis, converts evolutionary relationships into geographical relationships. How to track a dinosaur. By combining data from fossils and models of the ancient Earth, researchers can map where ancient species may have migrated. This method, called biogeographical network analysis, converts evolutionary relationships between species into geographical relationships. This method was used in research by Tai Kubo, Ph.D., a postdoctoral researcher affiliated with the University Museum at the University of Tokyo. Image by Caitlin Devor, The University of Tokyo{module In-article}

For example, cats and dogs are more closely related to each other than to kangaroos. Therefore, a geographical barrier must have separated the ancestors of kangaroos from the ancestors of cats and dogs well before cats and dogs became separate species.

Most fossils are found in just a few hot-spot locations around the world and many ancient species with backbones (vertebrates) are known from just one fossil of that species. These limitations mean that a species' fossils cannot reveal the full area of where it was distributed around the world.

"Including evolutionary relationships allows us to make higher resolution maps for where species may have migrated,” said Kubo.

The analysis used details from evolutionary studies, the location of fossil dig sites, and the age of the fossils. Supercomputer simulations calculated the most likely scenarios for the migration of species between continents on the Cretaceous-era Earth, 145 to 66 million years ago.
Early Cretaceous biogeographical map of nonavian dinosaurs. During the Early Cretaceous period (145-100 million years ago), nonavian dinosaurs likely migrated between Africa and Europe. The results are part of research by Tai Kubo, Ph.D., a postdoctoral researcher affiliated with the University Museum at the University of Tokyo. Image adapted from research figure originally published in Systematic Biology, DOI: 10.1093/sysbio/syz024{module In-article}
North and south divide
This new analysis verified what earlier studies suggested: nonavian dinosaurs were divided into a group that lived in the Northern Hemisphere and another that lived in the Southern Hemisphere, and that those two groups could still move back and forth between Europe and Africa during the Early Cretaceous period (145 to 100 million years ago), but became isolated in the Late Cretaceous period (100 to 66 million years ago).

During the Early Cretaceous period, there were three major supercontinents: North America-Europe-Asia, South America-Africa, and Antarctica-India-Australia.

By the Late Cretaceous period, only the North America-Europe-Asia supercontinent remained. The other supercontinents had separated into the continents we know today, although they had not yet drifted to their current locations.

“During the Late Cretaceous period, high sea levels meant that Europe was a series of isolated islands. It makes sense that nonavian dinosaur species differentiated between Africa and Europe during that time,” said Kubo.

Kubo plans to complete additional biogeographical analyses for different time periods to continue tracking extinct species around the world and through time.