UW scientists show NASA laser project benefits animal researchers' supercomputer models

Austin Smith, an assistant research scientist for the team of Assistant Professor Joe Holbrook in UW’s Haub School of Environment and Natural Resources, led the research that showed NASA’s Global Ecosystem Dynamics Investigation mission can provide valuable information about the world’s forests for wildlife scientists. (Kimberly Denningmann Photo)Scientists researching forest carnivores such as martens, foxes, and coyotes spend hours clambering through rugged terrain, sometimes in deep snow, placing and baiting camera traps to learn about animals’ behavior in relation to their habitat.

In recent years, this on-the-ground work has received a big boost from what might seem to be an unlikely source: NASA. 

In a new scholarly paper that details research in northwest Wyoming, University of Wyoming researchers explain how NASA’s Global Ecosystem Dynamics Investigation (GEDI) mission can provide valuable information about the world’s forests for wildlife scientists. The article appears in the journal Forest Ecology and ManagementThis graphic, created by Austin Smith, shows the Global Ecosystem Dynamics Investigation instrument on the International Space Station and a map of a forested area analyzed by the instrument. (University of Maryland and Esri Photos)

Using a light detection and ranging (LiDAR) laser instrument installed on the International Space Station, GEDI collects high-resolution observations of the three-dimensional structure of Earth’s forest -- including precise measurements of forest canopy height, canopy cover, and vertical structure. GEDI was attached to the International Space Station in 2018 for a two-year mission that has been extended until January 2023; it is expected to collect over 10 billion samples of Earth’s tropical and temperate forests.

“Our work indicated that spaceborne LiDAR collected from the GEDI mission provided a ready sampling of forest structure that could be combined with other remotely sensed data to improve our understanding of animal-habitat relationships,” wrote the researchers, led by Austin Smith, now an assistant research scientist for the team of Assistant Professor Joe Holbrook in UW’s Haub School of Environment and Natural Resources.

This image of a red fox is captured on a forest camera trap in northwest Wyoming. (Wyoming Game and Fish Department Photo)

Working in the greater Yellowstone ecosystem -- including two national parks, parts of three national forests, one national wildlife refuge, and Bureau of Land Management land -- the researchers deployed 107 camera traps for three consecutive winters. Based on photographs of target species, they calculated habitat use for Pacific martens, Rocky Mountain red foxes, and coyotes, along with prey species red squirrels and snowshoe hares.

The scientists then paired data from GEDI with other remote-sensing platforms to create forest height and structure maps, which they used to run supercomputer models to evaluate animal-environment relationships. They found that the pairing of GEDI data with other sensors resulted in a substantial improvement in characterizing vertical and horizontal forest structures, which aided efforts to understand important habitat features for the animals studied.

“Our successes are likely transferrable to other landscapes and animal species, which is important given the large-scale disturbances that are occurring in Western forests, such as wildfire and bark beetle outbreaks,” the researchers say.

Japanese researchers decode the complex ordering of atoms in mixed-anion materials

Waveform (left) and crystal structure model (right) obtained by nuclear magnetic resonance experiments of the composite anion material Pb2Ti4O9F2. The two peaks appearing in the waveform demonstrate the two types of atomic positions are selectively occupied when some of the oxygen in the original solid is replaced by fluorine. Using density functional theory-based calculations, the researchers explained the preference of fluorine occupation on these sites.Solid-state materials are widely used in semiconductors, phosphors, and batteries, and have become an indispensable part of modern life. Substitution of elements in these complex composite materials is a popular technique to achieve desired material properties. Especially, various properties can be achieved by partially replacing oxygen in the oxide solid with another element such as fluorine (composite anion technology). However, to tune material properties by substitution, it is important to know the sites in the material where the element is substituted. If the substitution site is near the highly reactive site in the solid, it favors the reaction that develops a certain material property.

To this end, a team of researchers led by Professor Ryo Maezono from the Japan Advanced Institute of Science and Technology developed an analytical tool to investigate the ordering of fluorine in lead titanium oxyfluoride, a complex composite material. In a recent study published in Dalton Transactions on September 23, 2022, the researchers report developing an interdisciplinary method for clarifying the positions of substitution atoms in complex composite materials. To overcome the limitation of determining the sites of substitution by experimental techniques alone, the team employed advanced computational simulations. As Professor Maezono explains, “We have established a method for clarifying the positions of substitution atoms in solid materials, which cannot be clarified only by experiments, by computer simulation.”

The researchers used a simulation called first-principles calculation (density functional theory) to analyze the experimental results and determine the element substitution positions in the composite anion material. The team succeeded in identifying the element substitution positions for composite anion materials where some of the oxygen atoms are replaced by fluorine. Simulations were performed using first-principles calculations for a crystal structure model with various element substitution positions, and each energy value was compared. The results show that the substitution position that gives the lowest energy value is the likely position for substitution. Further simulations were performed using the crystal structure model with the substitution positions determined in this way and results consistent with the data observed in various experiments were obtained. This analysis shows that in lead titanium oxyfluoride, the fluorine atoms predominantly occupy two of the six available inequivalent sites in a ratio of 73: 27. The researchers explained the preference of fluorine occupation on these sites using density functional theory-based calculations that matched the experimentally observed occupation ratio. They further explain that the lead atom valence electrons could potentially determine the majority and minority fluorine occupation sites.

Using supercomputing facilities, faster simulations are now possible to determine which substitution position has the least discrepancy with the experiment. This approach complements experimental observations to completely understand the mechanism of anion ordering in complex materials. This result makes it possible to provide a powerful analytical tool in the field of material development, in which atomic-level substitution is performed on solid materials and their properties are tuned. Professor Maezono concludes, “The methodology developed in this work can accelerate the development of mixed-anion materials. Mixed-anion technique could realize better materials than the conventional mono-anion materials in semiconductor spintronics industries.”

Stanford prof Zhao improves the prediction of drought by adding plant processes

Researchers found that more information about soil dryness, how plants alter soil structure, and how plants themselves respond to drought could improve prediction models about flash drought risk. (Image credit: Getty Images)Based on new analyses of satellite data, scientists have found that hydrologic conditions that increase flash drought risk occur more often than current models predict. The research also shows that incorporating how plants change soil structures can improve Earth system models. The research was supported by a NASA Terrestrial Ecology award through the New Investigator Program and by a NASA MAP program award.

As physical links between the ground and the sky, plants play an important role in shaping Earth’s weather and climate. Now, Stanford University researchers have revealed how a closer look at plants’ inner workings may be able to help improve model predictions of some devastating global disasters.

Flash droughts, which develop rapidly and deplete water availability in a matter of weeks, are associated with changes in evapotranspiration – the process of plants moving moisture from their roots to the air. Water undergoing evapotranspiration is sometimes considered “lost” to the atmosphere, so accurate calculations of this loss can be critical to understanding impacts on water resources and ecosystems.

By analyzing satellite data of both precipitation and moisture belowground, researchers calculated changes in evapotranspiration during droughts that occurred globally from 2003 to 2020. The research reveals more details about evapotranspiration’s role in these devastating events.

“When water is already limited, the evapotranspiration will continue to make the water loss happen even faster – and that will make the drought more severe in a much shorter time period,” said lead study author Meng Zhao, a postdoctoral researcher in Earth system science in the Stanford Doerr School of Sustainability. “We have a very big challenge in predicting flash droughts and the underestimation of water loss could be a major obstacle in that prediction.”

Droughts with fast onset and intensification can impact vulnerable communities and ruin food production, as was seen in the 2012 Central Great Plains flash drought that resulted in more than $30 billion in damages. For models to be improved, the researchers say they need to incorporate a hidden element in the process of evapotranspiration: how plants change the structure and pathways in the soil surrounding their roots.

“We found that the model error seems to be explained by the way plants change how particles are arranged in the soil,” said senior study author Alexandra Konings, an assistant professor of Earth system science. “As a result of these changes to the soil, water flows through the soil differently, changing where and how much water is available for plants to take up and transpire.”

Balancing act

Similar to the way people can live with various diets, exercise habits, and hours of sleep based on available resources, plants respond to droughts with wide variability. The tiny pores in leaves called stomata that release water can close, but not all plants close their stomata equally or at the same rates. During drought, drier atmospheres have a greater ability to pull water out of the land through evapotranspiration, causing it to increase – but if the stomata close sufficiently, it will reduce evapotranspiration relative to non-drought times.

“There’s such a diversity of ways that plants operate that it can be really hard to fully understand, predict, and quantify in the models,” Konings said. “And unfortunately, if this increase in evapotranspiration is happening more often than we realize, it’s intensifying the effect of the drought; there’s even less water in the soil than we realize because more is being lost to the atmosphere.”

Current Earth system models show increases in evapotranspiration, in which stomata are more open, occurring about 25% of the time during droughts. Yet according to the researchers’ new estimate, it occurs about 45% of the time. “This underestimation is particularly large in relatively drier climate and lower biomass regions,” the study authors write. 

Researchers combined observations of water storage from the Gravity Recovery and Climate Experiment (GRACE) satellites with precipitation data from the Global Precipitation Climatology Project to calculate evapotranspiration measurements across the globe. Whether a given drought in a particular location leads to high evapotranspiration – and has the potential to develop into a flash drought – depends on a range of factors. The authors found that dry soils are a key control. They further found that current models don’t account for roots’ effect on how water travels through soils. This caused errors in the model simulations of soil dryness and, as a result of that, evapotranspiration.

“We knew that there were problems with the models, but I was really surprised at how off they were,” Konings said. “I hope that other folks in the community who are building different models use the lessons from our paper.”

A transferrable approach

The findings point to the need for improved model representations of soil moisture impacts on evapotranspiration, soil structure effects on water transfer, and plant traits to understand current and future water resources. While the researchers did not calculate how these new evapotranspiration measurements may affect future climate scenarios – which are expected to bring more frequent and severe droughts – they say the findings should be easily transferable to other models. And since it’s based on satellite data, the work doesn’t require on-the-ground resources.

“You can clearly see that the models underestimate the evapotranspiration increase during droughts for arid and semi-arid regions,” Zhao said. “That means our understanding of this phenomenon is especially poor in regions that are already suffering from environmental injustice issues – I think our work can help improve the knowledge of these regions that are already water-stressed.”